PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc01272.1.g00100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 308aa    MW: 34002 Da    PI: 6.7427
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc01272.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.13.9e-35281202103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEE CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFk 82 
                                   Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+
  Zmw_sc01272.1.g00100.1.am.mk  28 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFA 99 
                                   9****************************************************************999.........**** PP

                                   ESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  83 hksFkkgkkellekikrkkse 103
                                   ++ F+kg k+ll +i+r+ks+
  Zmw_sc01272.1.g00100.1.am.mk 100 NEFFRKGAKHLLVEIHRRKSS 120
                                   ******************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.7E-3718112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.5E-5824117IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.35E-3325117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-192851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.6E-3128117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-197991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MAFLVERCGE MVVSMESSAH AKPVPAPFLT KTYQLVDDPC TDHIVSWGED DTTFVVWRPP  60
EFARDLLPNY FKHNNFSSFV RQLNTYGFRK IVADRWEFAN EFFRKGAKHL LVEIHRRKSS  120
QPPTPLPPHQ PFHHHHHHHL NPFAPTPPPP THPAVYHFQE EPVAAAHGGG VHGGGNDGNG  180
SGGDFLAALS EDNRQLRRRN SLLLSELAHM KKLYNDIIYF LQNHVTPVTS PSAAAHASQL  240
PAGAGGVASS CRLMELDPDS SSPPPGPDVV PGDADGTVKL FGVALQGKKK RLHREDGDDD  300
DHDQGSEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-212412017123Heat shock factor protein 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463264.11e-147hypothetical protein SORBIDRAFT_02g040790
SwissprotQ7XHZ01e-133HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLC5X3D41e-147C5X3D4_SORBI; Putative uncharacterized protein Sb02g040790
TrEMBLB7ZXV61e-146B7ZXV6_MAIZE; Uncharacterized protein
STRINGSb02g040790.11e-146(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394